*Final Update*
I was not denied, however over the course of time, my opinions changed and I was not even interested in obtaining a permit, but I was just interested in the possibility of a nobody hobbiest like myself getting a permit to transport ants. This whole process turned into an educational experience for myself that I hoped to share with everyone here. The message I received was from an employee of APHIS who had additional concerns about the permit and offered some further insight into what it means to be a permit holder. I will paste parts of the message into the body below:
"It is quite rare that our group would permit an entire family of insects. Many Formicidae can be quite invasive, environmentally or economically destructive or cause serious property damage. Do you have any particular species in mind as that might aid you in receiving approval? As a general rule, possessing insects from within your own state does not require permits, Bringing insects across state lines usually will require a permit."
Someone get Dr. Miller some internet points, because his earlier post nailed that being vague generally will not get you a permit. The employee echoed the best advice (in my opinion) that this forum gives in sentence two of the quote.
"Please be advised that if permits were to be granted, you would be potentially subject to an initial inspection of the containment facility followed by unannounced inspections or periodic compliance inspections for regulated organisms. As a result, I would encourage you to consider native species for your studies."
This is the part of the message that made me decide I had gone far enough (although inspections, or the possibility there of, where expected). I believe my goal of learning about the APHIS permiting process, as well as sharing with everyone here who is interested, has been achieved. I messaged the employee who wrote me this message on our internal skype system and thanked him for taking the time to review the application and that I will not be perusing the permit any farther.
My advice from this process for anyone who is interested in attempting it themselves, be prepared to invest a lot of time and money into this hobby. I bypassed a big step of getting an eAuthentication by using my USDA credentials. APHIS will expect you to have facilities up to par with museums, labs, and other institutions that can contain pests, as they should. If you have these facilities, be ready for inspection from the USDA. I realized that this was an intensive process, as we do it for work to ship dirt to our national soils lab in Nebraska, and I hope this post helps anyone interested in this realize just this.
Catch local, keep local.
Edited by CallMeCraven, April 3 2017 - 7:43 AM.